Detailed information of SNP:
|
SNP ID:
sf0622629107(Gbrowse)
Chromosome: chr06 Position: 22629107 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 95.02% | 4.98% |
| All Indica | 791 | 93.55% | 6.45% |
| All Japonica | 493 | 96.75% | 3.25% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 96.77% | 3.23% |
| Indica II | 209 | 85.65% | 14.35% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 334 | 97.01% | 2.99% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622629107 | A->G | LOC_Os06g38240(LOC_Os06g38240.1) | Synonymous |