Detailed information of SNP:
|
SNP ID:
sf0622636480(Gbrowse)
Chromosome: chr06 Position: 22636480 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 97.72% | 2.28% |
| All Indica | 793 | 98.11% | 1.89% |
| All Japonica | 489 | 96.52% | 3.48% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 96.78% | 3.22% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 87.91% | 12.09% |
| Japonica Intermediate | 63 | 92.06% | 7.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622636480 | T->C | LOC_Os06g38260(LOC_Os06g38260.1) | INTRON |