Detailed information of SNP:
|
SNP ID:
sf0622641010(Gbrowse)
Chromosome: chr06 Position: 22641010 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 97.87% | 2.13% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 487 | 93.84% | 6.16% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 330 | 93.64% | 6.36% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 63 | 88.89% | 11.11% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622641010 | C->G | LOC_Os06g38270(LOC_Os06g38270.1) | Non-Synonymous SNP |