Detailed information of SNP:
|
SNP ID:
sf0622647141(Gbrowse)
Chromosome: chr06 Position: 22647141 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1358 | 93.67% | 6.33% |
| All Indica | 759 | 89.72% | 10.28% |
| All Japonica | 476 | 99.58% | 0.42% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 358 | 87.99% | 12.01% |
| Indica II | 205 | 91.71% | 8.29% |
| Indica Intermediate | 196 | 90.82% | 9.18% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 85 | 97.65% | 2.35% |
| Japonica Intermediate | 59 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622647141 | T->C | INTERGENIC | None |