Detailed information of SNP:
|
SNP ID:
sf0622665711(Gbrowse)
Chromosome: chr06 Position: 22665711 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 88.62% | 11.38% |
| All Indica | 792 | 83.59% | 16.41% |
| All Japonica | 491 | 95.11% | 4.89% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 86.40% | 13.60% |
| Indica II | 212 | 90.09% | 9.91% |
| Indica Intermediate | 205 | 71.71% | 28.29% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 88 | 76.14% | 23.86% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622665711 | C->T | INTERGENIC | None |