Detailed information of SNP:
|
SNP ID:
sf0622672585(Gbrowse)
Chromosome: chr06 Position: 22672585 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 84.70% | 15.30% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 496 | 65.32% | 34.68% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 334 | 70.66% | 29.34% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622672585 | T->C | LOC_Os06g38310(LOC_Os06g38310.1) | INTRON |