Detailed information of SNP:
|
SNP ID:
sf0622685372(Gbrowse)
Chromosome: chr06 Position: 22685372 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 60.53% | 39.47% |
| All Indica | 788 | 34.26% | 65.74% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 370 | 25.95% | 74.05% |
| Indica II | 212 | 31.60% | 68.40% |
| Indica Intermediate | 206 | 51.94% | 48.06% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622685372 | C->T | INTERGENIC | None |