Detailed information of SNP:
|
SNP ID:
sf0622746042(Gbrowse)
Chromosome: chr06 Position: 22746042 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1340 | 87.16% | 12.84% |
| All Indica | 721 | 76.84% | 23.16% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 348 | 76.15% | 23.85% |
| Indica II | 185 | 90.81% | 9.19% |
| Indica Intermediate | 188 | 64.36% | 35.64% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622746042 | C->T | LOC_Os06g38400(LOC_Os06g38400.1) | Synonymous |