Detailed information of SNP:
|
SNP ID:
sf0622755913(Gbrowse)
Chromosome: chr06 Position: 22755913 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1339 | 95.82% | 4.18% |
| All Indica | 746 | 93.30% | 6.70% |
| All Japonica | 479 | 99.37% | 0.63% |
| Aus | 62 | 100.00% | 0.00% |
| Indica I | 350 | 88.00% | 12.00% |
| Indica II | 199 | 98.49% | 1.51% |
| Indica Intermediate | 197 | 97.46% | 2.54% |
| Temperate Japonica | 323 | 99.38% | 0.62% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 62 | 98.39% | 1.61% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622755913 | C->T | LOC_Os06g38410(LOC_Os06g38410.1) | Non-Synonymous SNP |