Detailed information of SNP:
|
SNP ID:
sf0622756627(Gbrowse)
Chromosome: chr06 Position: 22756627 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1218 | 65.35% | 34.65% |
| All Indica | 653 | 60.49% | 39.51% |
| All Japonica | 460 | 79.35% | 20.65% |
| Aus | 57 | 24.56% | 75.44% |
| Indica I | 299 | 73.91% | 26.09% |
| Indica II | 170 | 37.06% | 62.94% |
| Indica Intermediate | 184 | 60.33% | 39.67% |
| Temperate Japonica | 316 | 92.72% | 7.28% |
| Tropical Japonica | 81 | 30.86% | 69.14% |
| Japonica Intermediate | 63 | 74.60% | 25.40% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 34 | 64.71% | 35.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622756627 | C->T | LOC_Os06g38410(LOC_Os06g38410.1) | Synonymous |