Detailed information of SNP:
|
SNP ID:
sf0622756652(Gbrowse)
Chromosome: chr06 Position: 22756652 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1322 | 84.80% | 15.20% |
| All Indica | 744 | 84.68% | 15.32% |
| All Japonica | 467 | 89.72% | 10.28% |
| Aus | 61 | 65.57% | 34.43% |
| Indica I | 359 | 88.86% | 11.14% |
| Indica II | 194 | 79.90% | 20.10% |
| Indica Intermediate | 191 | 81.68% | 18.32% |
| Temperate Japonica | 326 | 96.63% | 3.37% |
| Tropical Japonica | 78 | 57.69% | 42.31% |
| Japonica Intermediate | 63 | 93.65% | 6.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 36 | 88.89% | 11.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622756652 | T->C | LOC_Os06g38410(LOC_Os06g38410.1) | Synonymous |