Detailed information of SNP:
|
SNP ID:
sf0622787760(Gbrowse)
Chromosome: chr06 Position: 22787760 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 83.76% | 16.24% |
| All Indica | 798 | 99.25% | 0.75% |
| All Japonica | 495 | 55.76% | 44.24% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 333 | 41.14% | 58.86% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622787760 | C->G | INTERGENIC | None |