Detailed information of SNP:
|
SNP ID:
sf0622803800(Gbrowse)
Chromosome: chr06 Position: 22803800 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 57.77% | 42.23% |
| All Indica | 797 | 80.55% | 19.45% |
| All Japonica | 497 | 14.08% | 85.92% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 84.49% | 15.51% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 210 | 65.24% | 34.76% |
| Temperate Japonica | 335 | 11.04% | 88.96% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622803800 | G->A | INTERGENIC | None |