Detailed information of SNP:
|
SNP ID:
sf0622813693(Gbrowse)
Chromosome: chr06 Position: 22813693 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1283 | 60.87% | 39.13% |
| All Indica | 669 | 31.39% | 68.61% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 63 | 66.67% | 33.33% |
| Indica I | 300 | 25.00% | 75.00% |
| Indica II | 193 | 26.42% | 73.58% |
| Indica Intermediate | 176 | 47.73% | 52.27% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622813693 | A->C | INTERGENIC | None |