Detailed information of SNP:
|
SNP ID:
sf0622814672(Gbrowse)
Chromosome: chr06 Position: 22814672 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 50.18% | 49.82% |
| All Indica | 795 | 21.64% | 78.36% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 373 | 15.28% | 84.72% |
| Indica II | 213 | 19.25% | 80.75% |
| Indica Intermediate | 209 | 35.41% | 64.59% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622814672 | C->T | INTERGENIC | None |