Detailed information of SNP:
|
SNP ID:
sf0622816685(Gbrowse)
Chromosome: chr06 Position: 22816685 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 87.02% | 12.98% |
| All Indica | 798 | 98.50% | 1.50% |
| All Japonica | 489 | 65.85% | 34.15% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 331 | 77.95% | 22.05% |
| Tropical Japonica | 91 | 34.07% | 65.93% |
| Japonica Intermediate | 67 | 49.25% | 50.75% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622816685 | C->T | INTERGENIC | None |