Detailed information of SNP:
|
SNP ID:
sf0622819575(Gbrowse)
Chromosome: chr06 Position: 22819575 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 54.74% | 45.26% |
| All Indica | 797 | 27.60% | 72.40% |
| All Japonica | 494 | 97.37% | 2.63% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 21.07% | 78.93% |
| Indica II | 212 | 25.00% | 75.00% |
| Indica Intermediate | 210 | 41.90% | 58.10% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622819575 | C->T | INTERGENIC | None |