Detailed information of SNP:
|
SNP ID:
sf0622822124(Gbrowse)
Chromosome: chr06 Position: 22822124 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 85.84% | 14.16% |
| All Indica | 799 | 79.85% | 20.15% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 84.80% | 15.20% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 211 | 65.40% | 34.60% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622822124 | G->C | LOC_Os06g38510(LOC_Os06g38510.2) | UTR_3_PRIME |
| sf0622822124 | G->C | LOC_Os06g38510(LOC_Os06g38510.1) | UTR_3_PRIME |