Detailed information of SNP:
|
SNP ID:
sf0622855932(Gbrowse)
Chromosome: chr06 Position: 22855932 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 64.22% | 35.78% |
| All Indica | 795 | 94.97% | 5.03% |
| All Japonica | 495 | 12.32% | 87.68% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 211 | 89.57% | 10.43% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 334 | 12.87% | 87.13% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 67 | 22.39% | 77.61% |
| Group VI/Aromatic | 8 | 12.50% | 87.50% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622855932 | T->C | INTERGENIC | None |