Detailed information of SNP:
|
SNP ID:
sf0622856116(Gbrowse)
Chromosome: chr06 Position: 22856116 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1336 | 90.34% | 9.66% |
| All Indica | 719 | 97.22% | 2.78% |
| All Japonica | 494 | 79.35% | 20.65% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 330 | 99.09% | 0.91% |
| Indica II | 204 | 96.08% | 3.92% |
| Indica Intermediate | 185 | 95.14% | 4.86% |
| Temperate Japonica | 334 | 71.56% | 28.44% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622856116 | C->T | INTERGENIC | None |