Detailed information of SNP:
|
SNP ID:
sf0622936796(Gbrowse)
Chromosome: chr06 Position: 22936796 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 60.11% | 39.89% |
| All Indica | 799 | 93.37% | 6.63% |
| All Japonica | 497 | 12.27% | 87.73% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 12.84% | 87.16% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622936796 | A->T | INTERGENIC | None |