Detailed information of SNP:
|
SNP ID:
sf0622947501(Gbrowse)
Chromosome: chr06 Position: 22947501 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 91.61% | 8.39% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 497 | 77.87% | 22.13% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 68.06% | 31.94% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622947501 | T->C | INTERGENIC | None |