Detailed information of SNP:
|
SNP ID:
sf0622957107(Gbrowse)
Chromosome: chr06 Position: 22957107 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 71.47% | 28.53% |
| All Indica | 790 | 92.28% | 7.72% |
| All Japonica | 497 | 35.81% | 64.19% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 370 | 93.51% | 6.49% |
| Indica II | 212 | 90.09% | 9.91% |
| Indica Intermediate | 208 | 92.31% | 7.69% |
| Temperate Japonica | 335 | 46.27% | 53.73% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622957107 | C->T | INTERGENIC | None |