Detailed information of SNP:



SNP ID: sf0622957107(Gbrowse)

Chromosome: chr06

Position: 22957107
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1409 71.47% 28.53%
All Indica790 92.28% 7.72%
All Japonica497 35.81% 64.19%
Aus66 98.48% 1.52%
Indica I370 93.51% 6.49%
Indica II212 90.09% 9.91%
Indica Intermediate208 92.31% 7.69%
Temperate Japonica335 46.27% 53.73%
Tropical Japonica94 5.32% 94.68%
Japonica Intermediate68 26.47% 73.53%
Group VI/Aromatic14 50.00% 50.00%
Intermediate42 66.67% 33.33%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0622957107 C->T INTERGENIC None