Detailed information of SNP:
|
SNP ID:
sf0622962066(Gbrowse)
Chromosome: chr06 Position: 22962066 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 63.05% | 36.95% |
| All Indica | 792 | 39.90% | 60.10% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 374 | 16.84% | 83.16% |
| Indica II | 208 | 69.23% | 30.77% |
| Indica Intermediate | 210 | 51.90% | 48.10% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622962066 | C->T | LOC_Os06g38670(LOC_Os06g38670.1) | Non-Synonymous SNP |