Detailed information of SNP:
|
SNP ID:
sf0623000819(Gbrowse)
Chromosome: chr06 Position: 23000819 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 66.83% | 33.17% |
| All Indica | 797 | 96.74% | 3.26% |
| All Japonica | 497 | 23.14% | 76.86% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 25.97% | 74.03% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623000819 | T->C | INTERGENIC | None |