Detailed information of SNP:
|
SNP ID:
sf0623001092(Gbrowse)
Chromosome: chr06 Position: 23001092 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 70.22% | 29.78% |
| All Indica | 798 | 57.02% | 42.98% |
| All Japonica | 497 | 88.93% | 11.07% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 83.69% | 16.31% |
| Indica II | 213 | 18.31% | 81.69% |
| Indica Intermediate | 211 | 48.82% | 51.18% |
| Temperate Japonica | 335 | 87.76% | 12.24% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623001092 | G->A | INTERGENIC | None |