Detailed information of SNP:
|
SNP ID:
sf0623013230(Gbrowse)
Chromosome: chr06 Position: 23013230 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 54.93% | 45.07% |
| All Indica | 793 | 28.12% | 71.88% |
| All Japonica | 496 | 93.75% | 6.25% |
| Aus | 66 | 72.73% | 27.27% |
| Indica I | 370 | 27.03% | 72.97% |
| Indica II | 212 | 33.96% | 66.04% |
| Indica Intermediate | 211 | 24.17% | 75.83% |
| Temperate Japonica | 334 | 93.11% | 6.89% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623013230 | G->A | LOC_Os06g38764(LOC_Os06g38764.1) | INTRON |