Detailed information of SNP:
|
SNP ID:
sf0623013404(Gbrowse)
Chromosome: chr06 Position: 23013404 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 53.40% | 46.60% |
| All Indica | 792 | 28.66% | 71.34% |
| All Japonica | 497 | 95.17% | 4.83% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 370 | 28.65% | 71.35% |
| Indica II | 212 | 33.96% | 66.04% |
| Indica Intermediate | 210 | 23.33% | 76.67% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623013404 | G->A | LOC_Os06g38764(LOC_Os06g38764.1) | INTRON |