Detailed information of SNP:
|
SNP ID:
sf0623013544(Gbrowse)
Chromosome: chr06 Position: 23013544 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 55.18% | 44.82% |
| All Indica | 793 | 27.99% | 72.01% |
| All Japonica | 495 | 93.94% | 6.06% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 370 | 27.03% | 72.97% |
| Indica II | 212 | 33.49% | 66.51% |
| Indica Intermediate | 211 | 24.17% | 75.83% |
| Temperate Japonica | 334 | 93.11% | 6.89% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623013544 | T->C | LOC_Os06g38764(LOC_Os06g38764.1) | INTRON |