Detailed information of SNP:
|
SNP ID:
sf0623033327(Gbrowse)
Chromosome: chr06 Position: 23033327 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1358 | 93.74% | 6.26% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 439 | 81.55% | 18.45% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 299 | 73.58% | 26.42% |
| Tropical Japonica | 80 | 100.00% | 0.00% |
| Japonica Intermediate | 60 | 96.67% | 3.33% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623033327 | G->A | LOC_Os06g38800(LOC_Os06g38800.1) | INTRON |