Detailed information of SNP:
|
SNP ID:
sf0623039720(Gbrowse)
Chromosome: chr06 Position: 23039720 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 95.67% | 4.33% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 487 | 88.09% | 11.91% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 98.19% | 1.81% |
| Tropical Japonica | 88 | 52.27% | 47.73% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623039720 | C->G | LOC_Os06g38810(LOC_Os06g38810.1) | INTRON |