Detailed information of SNP:
|
SNP ID:
sf0623040412(Gbrowse)
Chromosome: chr06 Position: 23040412 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1325 | 85.21% | 14.79% |
| All Indica | 716 | 73.32% | 26.68% |
| All Japonica | 492 | 99.80% | 0.20% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 306 | 46.73% | 53.27% |
| Indica II | 207 | 99.03% | 0.97% |
| Indica Intermediate | 203 | 87.19% | 12.81% |
| Temperate Japonica | 330 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623040412 | C->T | LOC_Os06g38810(LOC_Os06g38810.1) | Non-Synonymous SNP |