Detailed information of SNP:
|
SNP ID:
sf0623041456(Gbrowse)
Chromosome: chr06 Position: 23041456 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 66.81% | 33.19% |
| All Indica | 799 | 61.83% | 38.17% |
| All Japonica | 497 | 71.43% | 28.57% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 85.60% | 14.40% |
| Indica II | 213 | 28.64% | 71.36% |
| Indica Intermediate | 211 | 53.08% | 46.92% |
| Temperate Japonica | 335 | 72.24% | 27.76% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623041456 | G->A | INTERGENIC | None |