Detailed information of SNP:
|
SNP ID:
sf0623055014(Gbrowse)
Chromosome: chr06 Position: 23055014 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 61.80% | 38.20% |
| All Indica | 794 | 40.68% | 59.32% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 23.08% | 76.92% |
| Indica I | 373 | 15.01% | 84.99% |
| Indica II | 211 | 76.78% | 23.22% |
| Indica Intermediate | 210 | 50.00% | 50.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623055014 | G->A | LOC_Os06g38840(LOC_Os06g38840.1) | INTRON |