Detailed information of SNP:
|
SNP ID:
sf0623063425(Gbrowse)
Chromosome: chr06 Position: 23063425 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 95.32% | 4.68% |
| All Indica | 799 | 96.50% | 3.50% |
| All Japonica | 493 | 95.54% | 4.46% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 334 | 94.31% | 5.69% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 12 | 58.33% | 41.67% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623063425 | T->G | INTERGENIC | None |