Detailed information of SNP:
|
SNP ID:
sf0623073202(Gbrowse)
Chromosome: chr06 Position: 23073202 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 61.98% | 38.02% |
| All Indica | 789 | 91.89% | 8.11% |
| All Japonica | 497 | 16.30% | 83.70% |
| Aus | 65 | 43.08% | 56.92% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 209 | 78.47% | 21.53% |
| Indica Intermediate | 206 | 93.20% | 6.80% |
| Temperate Japonica | 335 | 14.33% | 85.67% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623073202 | A->G | LOC_Os06g38890(LOC_Os06g38890.1) | INTRON |