Detailed information of SNP:
|
SNP ID:
sf0623155259(Gbrowse)
Chromosome: chr06 Position: 23155259 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 66.43% | 33.57% |
| All Indica | 799 | 97.75% | 2.25% |
| All Japonica | 474 | 11.81% | 88.19% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 313 | 15.02% | 84.98% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 67 | 13.43% | 86.57% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623155259 | T->C | LOC_Os06g39000(LOC_Os06g39000.1) | Synonymous |