Detailed information of SNP:
|
SNP ID:
sf0623167630(Gbrowse)
Chromosome: chr06 Position: 23167630 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 65.02% | 34.98% |
| All Indica | 798 | 56.02% | 43.98% |
| All Japonica | 497 | 82.49% | 17.51% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 83.73% | 16.27% |
| Indica II | 212 | 15.57% | 84.43% |
| Indica Intermediate | 211 | 47.39% | 52.61% |
| Temperate Japonica | 335 | 77.01% | 22.99% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623167630 | A->G | LOC_Os06g39020(LOC_Os06g39020.1) | Non-Synonymous SNP |