Detailed information of SNP:
|
SNP ID:
sf0623192047(Gbrowse)
Chromosome: chr06 Position: 23192047 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 66.50% | 33.50% |
| All Indica | 798 | 44.86% | 55.14% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 16.53% | 83.47% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 210 | 50.95% | 49.05% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623192047 | A->T | INTERGENIC | None |