Detailed information of SNP:
|
SNP ID:
sf0623197037(Gbrowse)
Chromosome: chr06 Position: 23197037 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 65.37% | 34.63% |
| All Indica | 796 | 56.53% | 43.47% |
| All Japonica | 497 | 82.49% | 17.51% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 83.73% | 16.27% |
| Indica II | 212 | 16.04% | 83.96% |
| Indica Intermediate | 209 | 48.80% | 51.20% |
| Temperate Japonica | 335 | 77.01% | 22.99% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623197037 | C->T | LOC_Os06g39070(LOC_Os06g39070.1) | UTR_3_PRIME |