Detailed information of SNP:
|
SNP ID:
sf0623219813(Gbrowse)
Chromosome: chr06 Position: 23219813 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 70.69% | 29.31% |
| All Indica | 791 | 50.70% | 49.30% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 371 | 21.02% | 78.98% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 207 | 62.32% | 37.68% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623219813 | C->T | INTERGENIC | None |