Detailed information of SNP:
|
SNP ID:
sf0623228185(Gbrowse)
Chromosome: chr06 Position: 23228185 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 54.09% | 45.91% |
| All Indica | 799 | 90.24% | 9.76% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623228185 | C->T | INTERGENIC | None |