Detailed information of SNP:
|
SNP ID:
sf0623233688(Gbrowse)
Chromosome: chr06 Position: 23233688 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 67.42% | 32.58% |
| All Indica | 798 | 46.12% | 53.88% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 16.80% | 83.20% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 210 | 54.29% | 45.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623233688 | C->A | INTERGENIC | None |