Detailed information of SNP:
|
SNP ID:
sf0623247267(Gbrowse)
Chromosome: chr06 Position: 23247267 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 72.01% | 27.99% |
| All Indica | 797 | 96.61% | 3.39% |
| All Japonica | 497 | 31.19% | 68.81% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 40.30% | 59.70% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623247267 | C->T | LOC_Os06g39150(LOC_Os06g39150.1) | Synonymous |