Detailed information of SNP:
|
SNP ID:
sf0623247693(Gbrowse)
Chromosome: chr06 Position: 23247693 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 74.26% | 25.74% |
| All Indica | 796 | 97.24% | 2.76% |
| All Japonica | 494 | 35.22% | 64.78% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 99.46% | 0.54% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 332 | 44.28% | 55.72% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623247693 | G->A | LOC_Os06g39150(LOC_Os06g39150.1) | Non-Synonymous SNP |