Detailed information of SNP:
|
SNP ID:
sf0623251883(Gbrowse)
Chromosome: chr06 Position: 23251883 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 60.77% | 39.23% |
| All Indica | 762 | 31.50% | 68.50% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 357 | 20.17% | 79.83% |
| Indica II | 205 | 48.29% | 51.71% |
| Indica Intermediate | 200 | 34.50% | 65.50% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623251883 | T->A | LOC_Os06g39160(LOC_Os06g39160.1) | Synonymous |