Detailed information of SNP:
|
SNP ID:
sf0623253586(Gbrowse)
Chromosome: chr06 Position: 23253586 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 98.09% | 1.91% |
| All Indica | 795 | 98.24% | 1.76% |
| All Japonica | 494 | 98.18% | 1.82% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623253586 | A->G | INTERGENIC | None |