Detailed information of SNP:
|
SNP ID:
sf0623261189(Gbrowse)
Chromosome: chr06 Position: 23261189 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 98.29% | 1.71% |
| All Indica | 782 | 97.06% | 2.94% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 98.92% | 1.08% |
| Indica II | 205 | 95.61% | 4.39% |
| Indica Intermediate | 206 | 95.15% | 4.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623261189 | C->T | LOC_Os06g39180(LOC_Os06g39180.1) | Non-Synonymous SNP |