Detailed information of SNP:
|
SNP ID:
sf0623264691(Gbrowse)
Chromosome: chr06 Position: 23264691 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 90.97% | 9.03% |
| All Indica | 784 | 89.41% | 10.59% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 48 | 20.83% | 79.17% |
| Indica I | 371 | 99.46% | 0.54% |
| Indica II | 206 | 74.27% | 25.73% |
| Indica Intermediate | 207 | 86.47% | 13.53% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623264691 | G->A | LOC_Os06g39190(LOC_Os06g39190.1) | Synonymous |