Detailed information of SNP:
|
SNP ID:
sf0623283814(Gbrowse)
Chromosome: chr06 Position: 23283814 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1291 | 66.38% | 33.62% |
| All Indica | 681 | 44.20% | 55.80% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 62 | 40.32% | 59.68% |
| Indica I | 315 | 45.40% | 54.60% |
| Indica II | 183 | 36.61% | 63.39% |
| Indica Intermediate | 183 | 49.73% | 50.27% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0623283814 | G->A | LOC_Os06g39220(LOC_Os06g39220.1) | Non-Synonymous SNP |